Plugs into your clinical workflow
Standard outputs for LIS, EHR, and LIMS environments. Zero proprietary lock-in.
Standard integration endpoints
All integrations operate locally — no data leaves your facility.
Reads FAST5 and POD5 data formats directly from flow cell run directories. No format conversion step required before analysis begins.
Input: FAST5 / POD5 — MinKNOW run output directory
Standard lab result message for LIS integration. Pathogen identification and AMR findings mapped to LOINC/SNOMED coded result segments for direct LIS posting.
Output: HL7 v2.5.1 ORU^R01 — MLLP or TCP/IP
DiagnosticReport resource for EHR integration. Observation resources carry organism identification and AMR gene findings. Compatible with Epic, Cerner, and standard FHIR R4 servers.
Output: FHIR R4 DiagnosticReport — REST API
Structured pathogen call export for LIMS and data pipelines. Machine-readable JSON for downstream analysis, flat CSV for spreadsheet-based lab workflows.
Output: JSON schema v3 / RFC 4180 CSV
POST pathogen result payload to your LIMS endpoint on analysis completion. Configurable retry logic and payload signing for production LIMS environments.
Output: HTTPS POST — HMAC-SHA256 payload signing
Secure file delivery to on-premises LIS servers and legacy systems. Supports SFTP with key authentication and configurable destination directory structure.
Output: SFTP — RSA/ECDSA key auth
Local integration architecture
All analysis and routing happens on your workstation. Cloud is never in the critical path.