Computational Drug Discovery

18 months to 8 weeks. Find your hit compound first.

Nanolix generates novel small-molecule candidates optimized for target binding affinity, ADMET profiles, and synthetic accessibility — exploring 10¹² chemical space computationally before you run a single assay.

10¹² Chemical space explored
8 wks Typical hit-to-lead timeline
0.001% Chemical space brute-force screening covers
$2.6B avg cost per approved drug
10+ yrs avg discovery to approval
0.001% of chemical space covered by HTS
The Problem

Brute-force screening leaves most of chemical space unexamined

Pharma spends $2.6B per approved drug. High-throughput screening covers the corners of chemical space that are convenient to enumerate — not the regions where multi-property optima for your specific target are likely to sit. Lipinski-compliant compounds with acceptable ADMET profiles and synthesizable scaffolds occupy a narrow, non-contiguous region that enumeration mostly misses.

Hit identification is where early programs lose years and budget. A 50-person chemistry department can run iterative design cycles to work through this; a 5-person biotech team cannot. Generative methods change that — but only when synthesizability is a first-class constraint during generation, not a filter applied after the fact.

Our Approach

From target constraints to ranked candidates

Target Profile Input

You provide the target protein structure, binding site constraints, key residues, and property thresholds. We ingest PDB IDs or structural files directly. No reformatting required.

Generative Chemistry Exploration

Our generative models navigate a learned latent chemical space via gradient-guided sampling toward multi-property optima — not exhaustive enumeration. We explore where conventional screening doesn't look.

Multi-Property Optimization

Candidates are ranked by Pareto-optimal binding affinity, full 11-property ADMET panel, and synthetic accessibility score. You receive SDF output with predicted properties and synthesis routes — ready for CRO handoff.

Platform Metrics

Numbers from our methodology

~2,400 candidates per discovery run
11 ADMET dimensions modeled simultaneously
8 wks average hit-to-lead timeline
>78% top candidates synthesizable without custom reagents
Abstract 2D chemical space visualization showing molecular cluster regions with color-coded property zones
Capabilities

Binding, ADMET, and synthesizability — jointly

Molecular property prediction
Binding affinity, 11-dimension ADMET panel, and synthesizability — modeled simultaneously for each candidate, with calibrated confidence intervals.
Generative scaffold exploration
Gradient-guided navigation of novel scaffold space. We generate structures in regions conventional enumeration never reaches.
Multi-objective Pareto optimization
Chemist-adjustable property weights. Trade-off analysis surfaces where binding affinity conflicts with metabolic stability or synthesizability.
CRO-compatible synthesis routes
Synthesis route sketches pre-checked against Enamine and WuXi AppTec standard catalog reagent availability. Candidates your CRO can actually quote.
Use Cases

Where Nanolix fits your program

Lead Hopping

Existing lead has off-target liabilities

Your current lead scaffold has hERG affinity or CYP3A4 inhibition that standard medicinal chemistry approaches haven't resolved after two design cycles.

We generate novel scaffolds with equivalent binding affinity to your target but explicit constraints excluding the liability flagged in your assays. Candidates ranked by predicted selectivity window.

8 wks to ranked alternative scaffolds
Scaffold Diversification

Need IP-distinct analogs

A competitor has filed broad composition-of-matter claims around your lead scaffold class. You need novel candidates with equivalent efficacy profiles and clear structural distance.

Generative exploration produces diverse scaffolds with explicit diversity analysis relative to known IP space. You receive candidates confirmed synthesizable with standard CRO reagents.

2,400+ structurally diverse candidates
Fragment Expansion

Fragment hit needs growing

You have a confirmed fragment hit at ~200 Da with good ligand efficiency. Growing it to drug-like molecular weight while maintaining binding and physical properties is the challenge.

Fragment expansion with simultaneous ADMET modeling as molecular weight increases. Predicted solubility, permeability, and metabolic stability at each growth step. Top candidates with synthesis routes.

11 props modeled per candidate
From the field

What researchers say

The candidates Nanolix returned weren't just structurally novel — the ADMET confidence intervals were honest. They flagged exactly where the model uncertainty was highest, which told us where to focus the first synthesis round. That transparency is not something you get from traditional virtual screening vendors.

Medicinal Chemistry Lead Oncology program, independent biotech

We ran a scaffold-hopping engagement after two failed design cycles. The timeline was the thing — eight weeks to a prioritized candidate set with synthesis routes the CRO confirmed as feasible. That's months faster than what our internal capacity allowed. The binding prediction accuracy on retrospective validation was within what the team would accept.

Computational Biology Director CNS discovery program, academic spinout
Start here

Start with a target briefing

Send us your target. We map the binding site, run a sample generation against your constraints, and return candidate structures with predicted properties — before any contract. 30-minute call to align on parameters, sample output within 5 business days.

Request a Target Briefing